Chaste
Summary
Contact Find a list of contact persons here.
Domain Cancer, Heart And Soft Tissue Environment.
Description Electrophysiology solver using FEM. Highly scalable parallel code.
Documentation
User’s guide
Scientific articles
Requirements
Computational requirements Programming language: C++
Dependencies: ParMETIS, Scons, PETSC.
Memory requirements:
Disk requirements: Parallel writing, reading files (10-30 GB of data) and writing files (50GB-200GB) per simulation.
Complementary tools:
Type of software licence Open Source.
Input requirements Format: Binary meshes.
Coming from:CG-scan segmentation.
Disk use:Several files, total of 10-30 GB.
Output requirements Format: HDF5, VTK.
Used by: Paraview, Matlab.
Disk use: Optional output format. Between 50 and 200 GB.
Performance and HPC profile
Parallelism Type of parallelism: MPI.
Scalability: Typical runs 720 cores / 30 nodes. Large runs 1080 cores / 45 nodes.
Mode of operation Multiple independent runs, one per scenario.
Deployed on Archer.
Getting started
Benchmarks and examples
Instructions for running on dedicated platforms